BtaEX6096682 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3514492-3525071:+
Coord C1 exon
chr23:3514492-3514599
Coord A exon
chr23:3515066-3515164
Coord C2 exon
chr23:3524943-3525071
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTTACTTGTAGTTC
3' ss Score
8.5
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GACTACGAATTACAAACGATGACCTACCGGGCCATGGTGGATTCCCAGCAAAAGTCTCCAGTGAAACGACGGAGAATGCAGAGCTCAGCAGATCTCGTCATTCAGGAG
Seq A exon
TTCATGGACCTGAGGACCCGATACACGGCTCTGGTCACCCTCATGACACAATATATTAAATTTGCTGGGGACTCATTGAAGAGACTGGAGGAGGAGGAG
Seq C2 exon
AAGTCACTGGAAGAAGAAAAGAAAGAGCATGTTGAAAAAGTCAAAGAATTACAAAAATGGGTATCAAATATCAGCAAGACATTGAGAGATGGAGAGAAGGCTGGAAAGTCTTCCTTTTCTAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'39-35,'39-32,41-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.121 C2=0.262
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCAGTGAAACGACGGA
R:
AGACTTTCCAGCCTTCTCTCCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]