GgaEX1021102 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89811153-89822912:+
Coord C1 exon
chr3:89811153-89811260
Coord A exon
chr3:89812072-89812170
Coord C2 exon
chr3:89822778-89822912
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCCATTTGTTTCTCTGCAGTTC
3' ss Score
9.16
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACTACGAGTTGCAGACTATGACTTACAGAGCTATGGTTGATTCCCAACAAAAATCTCCAGTGAAACGACGAAGAATGCAAAGCTCATCAGACTTCATTATTCAAGAG
Seq A exon
TTCATGGATTTACGAACTCGTTATACTGCCTTAGTGACTTTGATGACACAGTACATCAAGTTTGCAGGTGACTCTCTGAAAAGGCTGGAGGAGGAAGAG
Seq C2 exon
AGGTCAATGGAAGAAGAAAAAAAAGAACATGTTGAGAAGGCTGGGGATTTACTGAAATGGGTGTCAAACCTCAGCAAGACACTCAGCAAAGAAGGAGGAGAAAAGGCTGAAAAGACAGATTTGCCTAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'34-35,'34-33,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=0.152 C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCTATGGTTGATTCCCA
R:
GCTGAGTGTCTTGCTGAGGTT
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]