RnoEX0030018 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38026461-38036487:-
Coord C1 exon
chr9:38036380-38036487
Coord A exon
chr9:38035763-38035861
Coord C2 exon
chr9:38026461-38026589
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCTCACGTCTTCCTTGCAGTTC
3' ss Score
9.31
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GACTATGAATTGCAAACAATGACCTACAGGGCCATGGTGGATTCCCAGCAGAAGTCACCAATGAAGCGTCGGCGGATACAGAGCTCGGCGGACCTCATTATTCAAGAG
Seq A exon
TTCATGGACCTACGGACGAGGTACACTGCCCTGGTCACTCTTATGACGCAGTACATTAAATTCGCTGGTGATTCCTTGAAAAGGCTGGAGGAGGAGGAG
Seq C2 exon
AAGTCACTGGATGAAGAGAAGAAACAGCATGTTGAAAAGGCTAAAGAATTGCAGAAATGGGTATCAAATATCAGCGAGACACTGGGAGATGGGGAGAGAGCTGGGAAACCTCACTTCTCTAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'49-45,'49-42,50-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.108 C2=0.537
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCCCAGCAGAAGTCACC
R:
CTCTCTCCCCATCTCCCAGTG
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]