GgaEX1021102 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86419084-86430843:+
Coord C1 exon
chr3:86419084-86419191
Coord A exon
chr3:86420003-86420101
Coord C2 exon
chr3:86430709-86430843
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCCATTTGTTTCTCTGCAGTTC
3' ss Score
9.16
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACTACGAGTTGCAGACTATGACTTACAGAGCTATGGTTGATTCCCAACAAAAATCTCCAGTGAAACGACGAAGAATGCAAAGCTCATCAGACTTCATTATTCAAGAG
Seq A exon
TTCATGGATTTACGAACTCGTTATACTGCCTTAGTGACTTTGATGACACAGTACATCAAGTTTGCAGGTGACTCTCTGAAAAGGCTGGAGGAGGAAGAG
Seq C2 exon
AGGTCAATGGAAGAAGAAAAAAAAGAACATGTTGAGAAGGCTGGGGATTTACTGAAATGGGTGTCAAACCTCAGCAAGACACTCAGCAAAGAAGGAGGAGAAAAGGCTGAAAAGACAGATTTGCCTAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'44-50,'44-44,45-50
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.094 C2=0.601
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(12.6=30.6)
A:
NO
C2:
PF0068115=Plectin=PD(9.5=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCTATGGTTGATTCCCA
R:
GCTGAGTGTCTTGCTGAGGTT
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]