BtaEX6096686 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3509731-3512775:+
Coord C1 exon
chr23:3509731-3509869
Coord A exon
chr23:3511350-3511543
Coord C2 exon
chr23:3512613-3512775
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGTAAATTGTTCCATTTTAGCAA
3' ss Score
7.55
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTTGAAAACGGTCAACTTGGTGTTAAAAAACACTCAAGCTGCAGAAGCCCTTGTCAAACTCTATGAAACTAAATTGTGTGAAGAGGAAGCAGTTATAGCTGACAAGAATAACATTGAGAATCTGATAAGTACTTTAAAG
Seq A exon
CAATGGAGATCTGAAGTGGATGAAAAGAGAGAGGTCTTCCATGAGCTGGAGGATGAGCTGCAGAGAGCAAAGACCATCAGTGATGAGATGTTTAAAACCTACAAAGAGCGTGACCTTGACTTTGACTGGCACAAAGAAAAAGCAGATCAGTTGGTTGAGAGATGGCAGAATGTTCATGTTCAGATTGACAACAG
Seq C2 exon
GTTACGGGACTTGGAAGGCATTGGCAAGTCACTGAAGTACTACAGAGATACGTATCACCTGTTGGATGATTGGATCCAGCAAGTTGAAACTACTCAGAGGAAGATTCAAGAAAATCAGCCTGAAAATAGTAAAGCTCTGGCCACACAGTTGAATCAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'35-29,'35-28,36-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGCCCTTGTCAAACT
R:
ATTCAACTGTGTGGCCAGAGC
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]