GgaEX6031926 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89807064-89810328:+
Coord C1 exon
chr3:89807064-89807202
Coord A exon
chr3:89807723-89807916
Coord C2 exon
chr3:89810166-89810328
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTCATTTACTATGTTCTAGCAA
3' ss Score
6.99
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
ATTAAAAACTGTAAATTTGGTGCTGAAGAATACTCAAGGTGCAGAATCATTAGTAAAACTTTATGAAACTAAGTTATGTGAAGAAGAGGCAGTAACTGCTGACAAAACCAATATTGAAAATCTAATGGGTACATTAAAG
Seq A exon
CAATGGAGATCTGAAGTAGATGAGAAAAGAGAAGTGTTCCATGCCTTAGAGGATGAGCTGCAGAAGGCAAAGATGATCAGCGATCAGATGTTTAAAACGCACAAGGAACGTGATCTTGACTTTGACTGGCATAAAGAAAAAGTTGATCAGTTAGCCGAGAGGTGGCAAAACATTCATTCTCAAATTGAAAATAG
Seq C2 exon
GTTACGTGACTTAGAAGGTATTAATAAATCTCTGAAGTACTACAAAGATACTTACGATTCATTGGACACTTGGATTCAACAAGTGGAAGATACTCAGAGGAAGATTCAAGAAATCCGTCCTGAAAATAGCAAAGCATTGGCTAAACAGCTGAACCAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'30-30,'30-29,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAGAATACTCAAGGTGCA
R:
TGCTTTGCTATTTTCAGGACGGA
Band lengths:
255-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]