RnoEX6039193 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38038035-38040697:-
Coord C1 exon
chr9:38040559-38040697
Coord A exon
chr9:38039749-38039942
Coord C2 exon
chr9:38038035-38038197
Length
194 bp
Sequences
Splice sites
3' ss Seq
CATTGATGCATGTATTTTAGCAA
3' ss Score
5.25
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTGAAGACTGTTAATTTGGTTTTAAAAAACACCCAAGCTGCAGAAGCCCTTGTCAAACTCTACGAAACCAAGCTGTGTGAAGAAGAAGCAGTCATAGCTGACAAGAATAACATTGAGAATTTAATGAGTACGTTAAAG
Seq A exon
CAATGGCGATCAGAAGTAGATGAGAAGAGAGAGGTGTTCCACGCGTTGGAAGACGAGTTGCAGAAAGCGAAAGCCATCAGTGACGAGATGTTCAAGACACACAAAGAACGGGACCTTGACTTTGACTGGCACAAAGAAAAGGCAGACCAGCTCGTGGAAAGGTGGCAGAGTGTTCACGTCCAGATCGACAACAG
Seq C2 exon
GCTGCGGGACTTAGAAGGGATCGGGAAGTCCCTGAAGCACTACAGGGACTCCTACCACCCTCTAGATGACTGGATCCAGCAAATCGAAACGACCCAGAGAAAAATTCAGGAAAATCAGCCAGAAAACAGCAAAGCTCTGGCCGTACAGCTGAACCAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'44-39,'44-37,45-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGCCCTTGTCAAACT
R:
GGCCAGAGCTTTGCTGTTTTC
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]