MmuEX6023470 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34227205-34229190:+
Coord C1 exon
chr1:34227205-34227343
Coord A exon
chr1:34227961-34228154
Coord C2 exon
chr1:34229028-34229190
Length
194 bp
Sequences
Splice sites
3' ss Seq
CATTGATTCATGTATTTCAGCAA
3' ss Score
5.83
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATTGAAGACTGTGAATTTGGTTTTAAAAAACACTCAAGCTGCAGAAGCCCTTGTCAAACTCTACGAAACCAAACTGTGTGAAGAGGAAGCAGTTATAGCAGACAAGAATAACATTGAGAATTTAATGAGTACTTTAAAG
Seq A exon
CAATGGCGATCAGAAGTAGATGAGAAGAGAGAGGTGTTCCATGCATTGGAAGACGAGTTGCAGAAAGCAAAAGCCATCAGCGATGAGATGTTCAAGACACACAAAGAACGGGACCTTGACTTTGACTGGCACAAAGAAAAGGCAGACCAGCTTGTCGAAAGGTGGCAGAGCGTTCACGTCCAGATCGACAACAG
Seq C2 exon
GCTCCGGGACTTAGAAGGAATCGGGAAGTCCCTGAAGCACTACAGGGACTCCTACCACCCTCTCGATGACTGGATCCAGCACATTGAAACGACCCAGAGAAAAATTCAGGAAAATCAGCCAGAAAACAGCAAAGCCCTGGCCCTGCAGCTGAACCAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'50-44,'50-43,51-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.309
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAAGCCCTTGTCAAAC
R:
GCCAGGGCTTTGCTGTTTTCT
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: