BtaEX6096799 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7311775-7314764:-
Coord C1 exon
chr23:7314602-7314764
Coord A exon
chr23:7312975-7313166
Coord C2 exon
chr23:7311775-7311852
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTTCCTCTTTGCAGGGT
3' ss Score
12.01
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGCACCGTGTGGCTGTGGCTGTGAAGGGCCAGTCTGTCACCCTCATAATTGACTGTAAGAAGCGAGTCACTCGACCCCTCCCCCGGAGCGCCCGTCCAGTACTGGACACCCGGGGCGTGATCATCTTCGGTGCTCGGATCCTGGATGAGGAAGTCTTTGAG
Seq A exon
GGTGATATTCAGGAGCTTTCCATCATCCCGGGAGTGCAAGCTGCCTACGAATCCTGTGACCAGAAGGAGCTGGAGTGCGAGGGGGGTTGGAGGGAGAGACCTCAGAGACAGCCATCGCACAGAACGCAGAGATCTCCGAAGCAGCAACCACCAAGACTTCACAGGCCACAAAACCAGGAACCCCAGGCACAG
Seq C2 exon
TCCACTGAGTCTCTCTACTATGACTACGAGCCCCCCTATTATGATGTGATGACTACGGGCACCACCCCTGATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'4-4,'4-3,5-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.672 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(46.2=100)
A:
PF0221019=Laminin_G_2=PD(6.8=12.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGGCTGTGGCTGTG
R:
CTGATAATCAGGGGTGGTGCC
Band lengths:
234-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]