MmuEX6077033 @ mm10
Exon Skipping
Gene
ENSMUSG00000024330 | Col11a2
Description
collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
Coordinates
chr17:34043234-34045848:+
Coord C1 exon
chr17:34043234-34043396
Coord A exon
chr17:34044819-34045010
Coord C2 exon
chr17:34045771-34045848
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCCTCATCTCTGCAGGGC
3' ss Score
11.27
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGGCACCACGTGGCTGTGGCTGTGAAGGGTCAGTCTGTCACTCTCATTGTGGACTGTAAGAAGCGAGTTACCCGGCCCCTTCCCAGAAGTGTGCATCCGGTGTTGGACACCCACGGGGTGGTGATCTTTGGTGCCCACATCCTCGACGATGAAGTCTTTGAA
Seq A exon
GGCGATGTTCAGGAGCTCCTCGTTGTCCCAGGCGTCCAAGCTGCCTATCAGTCTTGTGGGCAGAAGGATCTGGAATGTGAGAGAGAACAGAGGGACGGCCCTCAGACTCAGAAGCCTCACAGAGCCCAGAGATCTCCAAAGAAGGAACCAGCAAGACTTCATAAGCCACAGAGCCAGGAGCCCCAGAAGCAG
Seq C2 exon
CCCACTGAGTCTCTCTACTATGACTACGAACCCCCCTATTACGATGTGATGACTACGGGGACAGCCCCTGATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024330-'4-7,'4-3,12-7=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.703 C2=0.942
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(43.9=100)
A:
PF0221019=Laminin_G_2=PD(7.3=14.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGCTGTGGCTGTG
R:
CTGATAATCAGGGGCTGTCC
Band lengths:
234-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types