DreEX6071871 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7290602-7294793:-
Coord C1 exon
chr19:7294631-7294793
Coord A exon
chr19:7292816-7292938
Coord C2 exon
chr19:7290602-7290718
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGGTTTTCTTCAGGGT
3' ss Score
11.88
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTGGCACCGCATTGCCATTTCTGTGCAGAAGAAGAACATCACTCTGATCCTGGACTGCAAGAATCGCATCACCAAAACTCTGCCAAGGAGCAACAACCCAGTGTTGGACACCAAGGGCATCACTGTTTTTGGAGCCCGTCTCCTGGATGAGGAGGTTTTCCAG
Seq A exon
GGTGAGATCCAGCAGCTGCTGATCGCATCCAACCCTCAGGCCGCATATGACTTCTGTGAGCATTACAGCCCTGACTGCGACTCTCCTCTGCCCAAAGTCCAGTCCCAGGACCCAAACACCTAT
Seq C2 exon
CACTTTGATGAAGAGCAGGATGATTATGAATACCCCTATTATTATGAAGGAACTACCAGTGTCCCTCCCTCCCCATCCAAACCTCCCTCCGTCCCAGCCGAGACACTCACTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422-'6-6,'6-5,7-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.373 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(45.0=100)
A:
PF0221019=Laminin_G_2=PD(8.3=24.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCTGATCCTGGACTGCA
R:
CTGTTCAGTGAGTGTCTCGGC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]