RnoEX6011228 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216900352-216930764:+
Coord C1 exon
chr2:216900352-216900514
Coord A exon
chr2:216923973-216924098
Coord C2 exon
chr2:216930648-216930764
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCATGCCTGATTCTTTGCAGGGT
3' ss Score
8.27
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTGGCACCGGGTAGCAATCAGTGTGGAGAAGAAAACTGTGACAATGATTGTCGATTGTAAGAAGAAAATCACAAAACCCCTCGATAGAAGCGAGAGATCGATAGTCGATACCAACGGAATCATGGTATTTGGAACAAGAATTTTAGAAACAGATGTTTTCCAG
Seq A exon
GGTGATATTCAGCAGTTCCTGATCACTGGTGACCCCAAGGCAGCATATGACTACTGTGACCATTACAGTCCCGACTGTGACTTAACATCCAAGGCCGCTCAGGCCCAGGAGCCGCACATAGATGAG
Seq C2 exon
TATGCACCTGAGGATATAATCGAGTATGACTATGAATATGGGGAGACAGACTATAAAGAGGCTGAGAGTGTAACAGAGATGCCCACTGTCACTGAAGAAACAGTAGCACAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'6-8,'6-7,7-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.769
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(43.5=100)
A:
PF0221019=Laminin_G_2=PD(8.1=23.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTAGCAATCAGTGTGGAG
R:
TCAGTGACAGTGGGCATCTCT
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]