DreEX6095588 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28775239-28798825:-
Coord C1 exon
chr24:28798663-28798825
Coord A exon
chr24:28777916-28778041
Coord C2 exon
chr24:28775239-28775325
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTTGGTCTCCTCAGGGT
3' ss Score
10.5
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTGGCATCGCGTAGGCATCAGCGTTGAGAAGAAGACAGTGACTATTGTTGTCGACTGTAAGAAGAAGCTGACCAAGCCATTGGGCAGGAGTGACCATGCCAGTATCGACACCAAGGGTATCACCGTTTTTGGCACCAGGATCCTGGATGAGGAATCTTTTGAG
Seq A exon
GGTGATATACAACAACTGCTGATTGTGGCTGACCCTAAAGCAGCTTACGACTACTGTGAACATTACAGCCCAGACTGTGACGTCCCTCACAAGGACACACTGCAGGCACAGGAGCCCGGAGAGGAG
Seq C2 exon
TACACAACTCCTGTTGAATATGGTGATTTATATGATTATTACGAGGGAGGCACACCCACAGCGACTGATGAGTTTTCTGAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165-'4-6,'4-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.683
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(46.2=100)
A:
PF0221019=Laminin_G_2=PD(7.7=21.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTAGGCATCAGCGTTGAG
R:
CTGCGGCTCAGAAAACTCATCA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]