BtaEX6016299 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40491908-40529713:+
Coord C1 exon
chr3:40491908-40492070
Coord A exon
chr3:40521651-40521779
Coord C2 exon
chr3:40529561-40529713
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCATGTTTGTTTCTTGGCAGGGG
3' ss Score
8.23
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGCACCGGGTAGCAATCAGCGTGGAGAAGAAAACTGTGACAATGATTGTTGATTGTAAGAAGAAAACTACAAAACCGCTTGACAGAAGTGAGAAAGCAATCGTTGACACCAATGGAATTATGGTTTTTGGGACAAGGATTTTGGATGAAGAAGTTTTTGAG
Seq A exon
GGGGACATCCAGCAATTGTTGATCATAGGTGACCCCAAAGCAGCATATGACTACTGTGAGCATTACAGTCCAGACTGTGATTCCTCAGCTCCCGAGGCTGCTCAGGCTCAGGAACCCCAGGTCGACGAG
Seq C2 exon
AAAAAGAAATTCAGTTTCAAAATGAAGATGAAGACAGTGGCCACTAATTCAAAGAAAAAGTCCAAAAAGTTTACACCCCCTAAATCTGAAAAATTTGCATCCAAGAAGAAGAAAACTTATCAAGCAGCAGCAATGGCCAAGCTAGGGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'5-6,'5-3,6-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.302 C2=0.255
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(41.9=100)
A:
PF0221019=Laminin_G_2=PD(7.8=23.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGCTTGACAGAAGTGAGA
R:
CTTTACCCCTAGCTTGGCCAT
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]