GgaEX1016292 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11912143-11936975:+
Coord C1 exon
chr8:11912143-11912305
Coord A exon
chr8:11923458-11923586
Coord C2 exon
chr8:11936859-11936975
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTACGTATGCTTTCCTACAGGGT
3' ss Score
8.86
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGGCATCGAGTAGCCATTAGCGTGGAGAAGAAAAGCATTACAATGATTGTTGACTGCAACAAAAAAACGACAAAACCACTGGAGAGAAGTGGCAAACCAGTTGTAGACACTAACGGCATCACTGTCTTTGGAACAAGGATTCTGGATGAAGAAGTATTTGAG
Seq A exon
GGTGAGATCCAACAGTTGTTGATTATAGCTGACCCTAGAGCTGCATATGACTATTGCGAACATTATAGTCCAGACTGTGATTCCCCAGTGCCTAATGCTGCTCAGGCTCAAGATCCTCAAGTTGATGAG
Seq C2 exon
TACACACCAGAAGATTTTATCGAATATGACTATGAGTATGGGGATGCAGATTATAAAGAAACTGAGTCTGTAACAGAGGGACCCCCACTGTTTGAAGAGACAATAGCACAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'4-5,'4-3,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.419 C2=0.692
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(45.8=100)
A:
PF0221019=Laminin_G_2=PD(6.8=18.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCGAGTAGCCATTAGC
R:
GGGGTCCCTCTGTTACAGACT
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]