BtaEX6096821 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7301292-7302767:-
Coord C1 exon
chr23:7302660-7302767
Coord A exon
chr23:7301641-7301694
Coord C2 exon
chr23:7301292-7301345
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGCCCTCTGTCTGTCCACAGGGC
3' ss Score
12.8
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGCGAGGTCGGAGTCCCCGGTTCCAGGGGCGAGGATGGTCCTGAGGGGCCGAAGGGGCGCACTGGACCCACGGGGGACCCTGGGCCCCCGGGGCTCATGGGCGAGAAG
Seq A exon
GGCAAGCTGGGTGTTCCTGGTCTGCCTGGCTACCCCGGACGCCAGGGCCCCAAG
Seq C2 exon
GGGTCGCTGGGATTTCCGGGTTTTCCTGGAGCCAGTGGAGAGAAGGGAGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGGGCGAGGATGG
R:
CTCCCTTCTCTCCACTGGCTC
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]