GgaEX1016848 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8210160-8212000:+
Coord C1 exon
chr17:8210160-8210267
Coord A exon
chr17:8210556-8210609
Coord C2 exon
chr17:8211947-8212000
Length
54 bp
Sequences
Splice sites
3' ss Seq
CAATTTTCTTTGTGTTTCAGGGA
3' ss Score
10.32
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGTGAAATCGGACCTCCGGGCCCCAGGGGTGAGGATGGCCCTGAAGGTCCCAAAGGTCGCTCGGGTCCCAACGGAGACCCCGGTCCTCTCGGTCCTGCTGGAGAGAAG
Seq A exon
GGAAAACTTGGCGTGCCAGGGCTGCCCGGCTACCCGGGCAGGCAGGGCCCAAAG
Seq C2 exon
GGCTCCATTGGCTTCCCAGGATTTCCAGGCGCCAACGGCGAGAAGGGCACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(55.6=100),PF0139113=Collagen=PU(38.6=88.9)
A:
PF0139113=Collagen=FE(22.7=100),PF0139113=Collagen=PU(11.1=44.4)
C2:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(16.5=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGGGTGAGGATGG
R:
GTGCCCTTCTCGCCGTTG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]