MmuEX6099934 @ mm9
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:27844659-27847567:+
Coord C1 exon
chr2:27844659-27844766
Coord A exon
chr2:27845558-27845611
Coord C2 exon
chr2:27847514-27847567
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCCTGCTCCTAGGGA
3' ss Score
10.98
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGGGAAATCGGCCCACCTGGTCCCCGAGGAGAAGATGGTCCTGAAGGTCCAAAGGGTCGAGGTGGTCCCAATGGTGATCCTGGTCCCCTGGGGCCCACTGGGGAAAAG
Seq A exon
GGAAAGCTTGGCGTGCCCGGATTACCGGGGTACCCAGGAAGACAAGGGCCAAAG
Seq C2 exon
GGTTCCATTGGATTCCCTGGCTTCCCGGGCGCCAACGGAGAGAAGGGTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(17.9=77.8)
C2:
PF0139113=Collagen=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGAGAAGATGGTCCTGA
R:
CTGCCACCCTTCTCTCCGTT
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: