DreEX0022782 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28715321-28747373:-
Coord C1 exon
chr24:28747266-28747373
Coord A exon
chr24:28747060-28747113
Coord C2 exon
chr24:28715321-28715374
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTGGCTTGTTTTTCACCAGGGC
3' ss Score
9.63
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GGAGAGCTGGGACTGGCTGGACCCAGAGGAGAAGATGGTCCAGAGGGCCCGAAGGGTCGTGCAGGGCCTAACGGTGAATCTGGACCCCAGGGATCTGCCGGAGAAAAG
Seq A exon
GGCAAACTAGGTGTTCCAGGATTGCCCGGCTATCCAGGACGTCAAGGGCCAAAG
Seq C2 exon
GGAATAGATGGAGGCCCAGGAGAGAAGGGAGAGGATGGAGAGTCTGGTCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165_MULTIEX1-15/42=14-37
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.0=16.7),PF0139113=Collagen=FE(57.4=100)
A:
PF0139113=Collagen=FE(27.9=100)
C2:
PF0139113=Collagen=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACCCAGAGGAGAAGAT
R:
GCTGACCAGACTCTCCATCCT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]