HsaEX1009289 @ hg38
Exon Skipping
Gene
ENSG00000204248 | COL11A2
Description
collagen type XI alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr6:33169383-33175681:-
Coord C1 exon
chr6:33175574-33175681
Coord A exon
chr6:33174527-33174580
Coord C2 exon
chr6:33169383-33169490
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTGTCCCTCCACAGGGC
3' ss Score
12.67
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GGCGAAGTTGGAGTCCCTGGTTCCAGGGGAGAGGATGGTCCTGAGGGGCCAAAGGGACGCACTGGACCGACTGGAGACCCTGGGCCCCCAGGGCTCATGGGCGAGAAG
Seq A exon
GGCAAGCTGGGTGTTCCTGGTCTGCCTGGCTATCCTGGACGTCAGGGACCCAAG
Seq C2 exon
GGTCCACGCGGGGAACGTGGAGAGAAAGGAGAGTCGGGGCAGCCAGGAGAGCCAGGGCCACCAGGGCCTAAAGGCCCCACAGGCGATGATGGCCCCAAAGGGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204248_MULTIEX2-6/37=5-26
Average complexity
C2
Mappability confidence:
90%=100=90%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.1=16.7)
A:
NO
C2:
PF0139113=Collagen=FE(42.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGGAGTCCCTGGTTCCA
R:
CCCCGACTCTCCTTTCTCTCC
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains