DreEX0022866 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7270557-7274490:-
Coord C1 exon
chr19:7274383-7274490
Coord A exon
chr19:7273416-7273469
Coord C2 exon
chr19:7270557-7270610
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTAAATAATGTCCTTCTAGGGT
3' ss Score
6.7
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGAGAGGTGGGCGTGCCCGGCCCAAGAGGAGAAGATGGTCCTGAGGGGCCAAAGGGTCGCGTCGGACCCCCTGGTGAAATTGGTCCCCTCGGCCTGTTGGGAGAGAAG
Seq A exon
GGTAAACTTGGTGTTCCTGGACTTCCTGGATATCCTGGACGTCAAGGAATAAAG
Seq C2 exon
GGTGAGGTTGGAGAGCCAGGACAAAAGGGAGCTAAAGGGTCCAAAGGAGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422_MULTIEX2-3/23=2-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.6=19.4)
A:
NO
C2:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(6.5=27.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAAGAGGAGAAGATGGT
R:
CCTTTGGACCCTTTAGCTCCC
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]