BtaEX6096856 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000602 | RXRB
Description
Bos taurus retinoid X receptor, beta (RXRB), mRNA. [Source:RefSeq mRNA;Acc:NM_001083640]
Coordinates
chr23:7323163-7325136:-
Coord C1 exon
chr23:7324980-7325136
Coord A exon
chr23:7324457-7324636
Coord C2 exon
chr23:7323163-7323335
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCTCTCGTCTCACAGGCA
3' ss Score
11.63
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTAACTCAACAGTGTCGCTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCAGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGCCCTGGGGCTGGCAAACGGCTATGTGCAATCTGCGGGGACCGAAGCTCAG
Seq A exon
GCAAACACTACGGGGTTTACAGCTGCGAGGGCTGCAAAGGCTTCTTCAAGCGCACCATCCGTAAGGACCTGACCTACTCGTGCCGGGACAACAAGGACTGCACGGTGGACAAGCGCCAGCGGAACCGCTGTCAGTACTGCCGCTACCAGAAGTGCCTGGCTACTGGCATGAAGAGGGAGG
Seq C2 exon
CTGTACAGGAGGAGCGTCAGCGGGGGAAAGACAAAGACGGGGATGGGGAGGGTGCTGGGGGAGCCCCCGAGGAGATGCCTGTGGACAGGATCCTGGAGGCAGAGCTTGCTGTGGAGCAGAAGAGCGACCAGGGCGTGGAGGGTCCCGGGGGGACCGGGGGCAGCGGCAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000602-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.736 A=0.033 C2=0.845
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(32.5=69.8),PF0010513=zf-C4=PU(15.7=20.8)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAACAGTGTCGCTCCCT
R:
CTCTGCCTCCAGGATCCTGTC
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]