RnoEX0077638 @ rn6
Exon Skipping
Gene
ENSRNOG00000000464 | Rxrb
Description
retinoid X receptor beta [Source:RGD Symbol;Acc:3611]
Coordinates
chr20:3824822-3826566:+
Coord C1 exon
chr20:3824822-3824978
Coord A exon
chr20:3825278-3825457
Coord C2 exon
chr20:3826394-3826566
Length
180 bp
Sequences
Splice sites
3' ss Seq
GCCAAACCTCCCTGTTGTAGGCA
3' ss Score
7.33
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTAACTCCACAGTGTCGCTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCAGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGCCCTGGGGCTGGCAAACGACTTTGTGCAATCTGCGGGGACCGAAGCTCAG
Seq A exon
GCAAGCACTATGGGGTTTACAGCTGCGAGGGCTGCAAGGGTTTCTTCAAGCGCACCATTCGGAAGGACCTGACCTACTCATGCCGAGATAACAAAGACTGCACAGTGGACAAGCGCCAGCGGAATCGCTGTCAGTACTGTCGATATCAGAAGTGCCTGGCCACCGGCATGAAAAGGGAGG
Seq C2 exon
CGGTACAGGAGGAGCGACAACGGGGGAAGGACAAAGACGGGGATGGGGATGGGGCTGGGGGAGCCCCCGAGGAGATGCCGGTGGACAGGATCCTGGAGGCAGAGCTTGCTGTGGAACAGAAGAGCGACCAAGGCGTTGAGGGCCCTGGGGGCACCGGGGGGAGTGGCAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000464-'8-9,'8-7,9-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=0.033 C2=0.862
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(35.2=69.8),PF0010513=zf-C4=PU(15.7=20.8)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAAGATGTGAAGCCACC
R:
CCTTGGTCGCTCTTCTGTTCC
Band lengths:
249-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]