HsaEX6046579 @ hg19
Exon Skipping
Gene
ENSG00000204231 | RXRB
Description
retinoid X receptor, beta [Source:HGNC Symbol;Acc:10478]
Coordinates
chr6:33164211-33166241:-
Coord C1 exon
chr6:33166085-33166241
Coord A exon
chr6:33165539-33165718
Coord C2 exon
chr6:33164211-33164383
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCCCTTTCCCTGTAGGCA
3' ss Score
12.12
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTAACTCAACAGTGTCACTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCAGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGCCCTGGGGCTGGCAAACGGCTATGTGCAATCTGCGGGGACAGAAGCTCAG
Seq A exon
GCAAACACTACGGGGTTTACAGCTGTGAGGGTTGCAAGGGCTTCTTCAAACGCACCATCCGCAAAGACCTTACATACTCTTGCCGGGACAACAAAGACTGCACAGTGGACAAGCGCCAGCGGAACCGCTGTCAGTACTGCCGCTATCAGAAGTGCCTGGCCACTGGCATGAAGAGGGAGG
Seq C2 exon
CGGTACAGGAGGAGCGTCAGCGGGGAAAGGACAAGGATGGGGATGGGGAGGGGGCTGGGGGAGCCCCCGAGGAGATGCCTGTGGACAGGATCCTGGAGGCAGAGCTTGCTGTGGAACAGAAGAGTGACCAGGGCGTTGAGGGTCCTGGGGGAACCGGGGGTAGCGGCAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204231-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.755 A=0.033 C2=0.792
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(39.4=69.8),PF0010513=zf-C4=PU(15.7=20.8)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAAGATGTGAAGCCACC
R:
GCCCTGGTCACTCTTCTGTTC
Band lengths:
250-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)