MmuEX6076978 @ mm9
Exon Skipping
Gene
ENSMUSG00000039656 | Rxrb
Description
retinoid X receptor beta [Source:MGI Symbol;Acc:MGI:98215]
Coordinates
chr17:34170500-34172771:+
Coord C1 exon
chr17:34170500-34170656
Coord A exon
chr17:34170967-34171146
Coord C2 exon
chr17:34172599-34172771
Length
180 bp
Sequences
Splice sites
3' ss Seq
ACTGCCAACCTTTCTCGTAGGCA
3' ss Score
7.67
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATCAACTCCACAGTGTCGCTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCGGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGTCCTGGGGCTGGCAAACGGCTCTGTGCAATCTGCGGGGACCGAAGCTCAG
Seq A exon
GCAAGCACTATGGGGTTTACAGCTGCGAGGGCTGCAAGGGTTTCTTCAAGCGCACCATTCGGAAGGACCTGACCTACTCGTGTCGTGATAACAAAGACTGTACAGTGGACAAGCGCCAGCGGAATCGCTGTCAGTACTGTCGCTATCAGAAGTGCCTGGCCACTGGCATGAAAAGGGAGG
Seq C2 exon
CGGTTCAGGAGGAGCGTCAACGGGGGAAGGACAAAGACGGGGATGGAGATGGGGCTGGGGGAGCCCCTGAGGAGATGCCTGTGGACAGGATCCTGGAGGCAGAGCTTGCTGTGGAGCAGAAGAGTGACCAAGGCGTTGAGGGTCCTGGGGCCACCGGGGGTGGTGGCAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039656-'5-6,'5-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.628 A=0.033 C2=0.828
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(35.2=69.8),PF0010513=zf-C4=PU(15.7=20.8)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAAGATGTGAAGCCACC
R:
TGGTCACTCTTCTGCTCCACA
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: