BtaEX6097349 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12695443-12698950:+
Coord C1 exon
chr23:12695443-12695550
Coord A exon
chr23:12696554-12696688
Coord C2 exon
chr23:12698789-12698950
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTTTCTCATCCTAGGTT
3' ss Score
9.66
5' ss Seq
TTGGTATCT
5' ss Score
0.67
Exon sequences
Seq C1 exon
ATCATTATGCGAGTTAAACTTGCAAGCTGTGGTTTTCTTGAAAACGTTATCTTGGCTCAAAAGTTTTATGTACTTTACAAACTCTGTGAAGAGCAACTTACTAAGCAG
Seq A exon
GTTCATTATGACTTTGGGTTGAGAAATATTCTATCTGTATTGAGGACACTCGGATCTCAAAAAAGAGCCAGACCAGAAGATAGTGAATTAAGCACGGTCATGAGAGGACTGAGAGATATGAACCTTTCTAAATTG
Seq C2 exon
ATTGATGAAGATGAACCCCTGTTCCTCAGCTTAATCAATGACCTGTTTCCAGGATTACAACTAGATAGTAATAGTTACGTGGAACTGCAAGCTGCAGTCACCAACCAGGTTCAGCTGGAAGGTTTGATTAACCATCCACCCTGGAATCTCAAACTCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'58-59,'58-58,59-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.1=100)
A:
PF127742=AAA_6=PD(10.3=53.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCTGTGGTTTTCTTGA
R:
CGAGTTTGAGATTCCAGGGTGG
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]