GgaEX6029630 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30668821-30670593:-
Coord C1 exon
chr3:30670486-30670593
Coord A exon
chr3:30669596-30669730
Coord C2 exon
chr3:30668821-30668982
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCACATTCTACTAGGTT
3' ss Score
7.81
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATAATTATAAGAGTTAAGCTTGCAAGTTATGGATTTATTGATAATGTGGTTTTGTCTCAGAAGTTCTTCGTTCTTTATAAACTTTGTGAGGAGCAGCTCACTAAGCAG
Seq A exon
GTTCATTATGACTTTGGTCTGAGGAACATCCTTTCAGTACTTAGGACTCTTGGAACTCAAAAAAGGGCCAGACCAAATGATAGTGAATTAAGCATTGTTATGAGGGGACTAAGAGATATGAATCTTTCAAAGCTG
Seq C2 exon
ATAGATGAAGATGAGCCCTTGTTTCTCAGTCTTATCAATGATCTGTTTCCGGGGTTGCAGTTGGACAGTAATAAATACAATGAGCTTCAGGCTGCAGTAGCTAATCAGGTTGAAGAGGCAGGATTGACTAATCATCCACCATGGAATCTTAAGCTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'47-49,'47-48,48-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.1=100)
A:
PF127742=AAA_6=PD(10.3=53.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTAAGCTTGCAAGTTATGGA
R:
ACAAGCTTAAGATTCCATGGTGGA
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]