DreEX6039508 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9239378-9243028:+
Coord C1 exon
chr16:9239378-9239572
Coord A exon
chr16:9241726-9241860
Coord C2 exon
chr16:9242921-9243028
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTCCTCTCCTAGGTT
3' ss Score
11.32
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AACCCTGGATATGCAGGCAGACAGGAGCTTCCAGAGAATCTAAAAATCAACTTCCGCTCTGTAGCGATGATGGTTCCTGACAGACAGATCATTATCAGGGTGAAGCTGGCGAGCTGTGGCTTCATTGATAATATCGAGCTGGCCAGAAAATTCTTCACTCTGTACAAACTGTGTGAGGAGCAGCTCTCTAAACAG
Seq A exon
GTTCATTATGACTTTGGCCTCCGCAATATTCTTTCTGTCCTGCGCACTCTTGGTGCTGCAAAACGAGCCAATCCTAATGACACAGAGTCCACAATTGTGATGAGAGTTCTGCGAGACATGAACCTGTCTAAACTG
Seq C2 exon
ATTGATGAGGACGAGCCATTGTTTCTAAGTTTAATTGAAGATCTTTTCCCTGGAATTCAGTTGGATAAAGCTGGTTACCCGGATCTGGAATCAGCTATAGACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(27.6=100)
A:
PF127742=AAA_6=PD(10.3=53.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAACTTCCGCTCTGTAGC
R:
AGCTGATTCCAGATCCGGGTA
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]