HsaEX6097380 @ hg38
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13823263-13829704:-
Coord C1 exon
chr5:13829510-13829704
Coord A exon
chr5:13824199-13824333
Coord C2 exon
chr5:13823263-13823370
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATGTATCTCACATTCTCTAGGTT
3' ss Score
8.95
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AATCCTGGCTATGCCGGACGGCAGGAACTCCCTGAAAACTTGAAGATTAATTTCCGCTCAGTGGCCATGATGGTGCCTGACCGTCAGATTATCATAAGGGTGAAGTTGGCTAGTTGTGGCTTCATTGACAACGTTGTTTTGGCCAGGAAGTTTTTCACGCTCTACAAACTGTGTGAGGAGCAGCTTTCTAAGCAG
Seq A exon
GTTCATTATGACTTTGGCCTGCGTAACATTCTGTCAGTTCTTCGGACCTTGGGAGCAGCAAAAAGAGCCAATCCAATGGATACGGAGTCCACGATTGTCATGCGTGTACTACGGGACATGAATCTTTCTAAACTG
Seq C2 exon
ATTGATGAGGATGAACCCTTGTTTTTGAGTTTGATTGAAGATCTCTTTCCAAATATTCTTCTGGACAAGGCAGGTTACCCTGAACTGGAAGCAGCAATTAGTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'58-56,'58-55,59-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(27.6=100)
A:
PF127742=AAA_6=PD(10.3=53.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCGCTCAGTGGCCATG
R:
ATTGCTGCTTCCAGTTCAGGG
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains