MmuEX6053059 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28257477-28262887:+
Coord C1 exon
chr15:28257477-28257671
Coord A exon
chr15:28261460-28261594
Coord C2 exon
chr15:28262780-28262887
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATCGTCATCATTTCTTCAGGTT
3' ss Score
9.29
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AACCCTGGCTATGCTGGACGCCAGGAGCTCCCGGAGAACTTGAAGATCAACTTCCGCTCTGTGGCTATGATGGTCCCTGACCGGCAGATTATCATCAGGGTGAAGCTGGCCAGCTGCGGCTTCATTGATAACGTAGTTCTGGCCAGAAAATTTTTCACGCTCTACCAGCTGTGTGAGGAGCAGCTCTCGAAGCAG
Seq A exon
GTTCACTATGACTTTGGTCTCCGCAACATTCTGTCAGTTCTGCGCACCCTGGGAGCAGCAAAAAGAGCCAGTCCCACGGATACAGAATCCACCATCGTCATGCGCGTGCTGCGGGACATGAATCTTTCCAAACTG
Seq C2 exon
ATTGATGAAGATGAGCCCCTGTTTTTGAGTTTGATTGAAGATCTATTTCCAAATATTCTTTTGGACAAGGCAGGCTATCCTGAGCTGGAGACAGCAATCAGTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'37-38,'37-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(27.6=100)
A:
PF127742=AAA_6=PD(10.3=53.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCCGGAGAACTTGAAGA
R:
AGGATAGCCTGCCTTGTCCAA
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: