GgaEX6020586 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76645291-76646605:+
Coord C1 exon
chr2:76645291-76645485
Coord A exon
chr2:76645809-76645943
Coord C2 exon
chr2:76646498-76646605
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAACTCTGCGTATATTCTAGGTG
3' ss Score
8.65
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AATCCAGGATATGCTGGACGGCAAGAACTTCCTGAAAACTTGAAGATCAACTTCCGTTCAGTGGCCATGATGGTTCCTGATCGTCAAATTATAATTCGTGTCAAGTTGGCTAGTTGTGGTTTTATTGCTAATGTTGTATTGGCAAGGAAATTCTTTACACTGTACAAGCTCTGCGAAGAACAGCTATCAAAGCAG
Seq A exon
GTGCATTATGATTTTGGTTTGCGGAATATATTGTCAGTGCTACGCACATTAGGAGCGGCAAAAAGAGCAAAGCCTACGGATACTGAGTCTACCATAGTTATGCGTGTGCTGAGAGACATGAACCTCTCTAAACTG
Seq C2 exon
ATTGATGAAGATGAACCCTTATTCCTGAGTTTAATTGAAGATCTGTTTCCAGATATCCATCTTGATAAAGAAAGCTATCCTGAACTGGAAGCTGCCATTGACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'39-45,'39-44,40-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(27.6=100)
A:
PF127742=AAA_6=PD(10.3=53.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGTTCAGTGGCCATGATG
R:
AATGGCAGCTTCCAGTTCAGG
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]