HsaEX6047045 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38834545-38838338:+
Coord C1 exon
chr6:38834545-38834652
Coord A exon
chr6:38835838-38835972
Coord C2 exon
chr6:38838177-38838338
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTTCTCCCATCTCAGGTT
3' ss Score
9.9
5' ss Seq
CTGGTATCT
5' ss Score
2.7
Exon sequences
Seq C1 exon
ATCATTATGAGAGTTAAACTTGCAAGCTGTGGTTTTCTTGAAAATGTTATCTTGGCTCAAAAATTTTACGTTCTTTACAAACTCTGTGAAGAGCAACTTACTAAACAG
Seq A exon
GTTCATTATGACTTTGGATTGAGAAATATTCTGTCTGTATTGAGGACTCTTGGATCTCAAAAAAGAGCCAGACCAGAAGATAGTGAATTAAGCATTGTCATGAGAGGACTAAGAGATATGAACCTTTCCAAACTG
Seq C2 exon
GTTGATGAAGATGAACCCCTGTTCCTCAGCTTAATCAATGACCTGTTCCCAGGACTGCAACTGGATAGTAATACTTATGCAGAACTGCAAAACGCAGTAGCCCATCAGGTTCAGATAGAGGGTTTGATTAACCATCCACCCTGGAACCTGAAACTCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'48-52,'48-51,49-52=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.1=100)
A:
PF127742=AAA_6=PD(10.3=53.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCTGTGGTTTTCTTGA
R:
AGTTTCAGGTTCCAGGGTGGA
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)