BtaEX6097350 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12695268-12696688:+
Coord C1 exon
chr23:12695268-12695354
Coord A exon
chr23:12695443-12695550
Coord C2 exon
chr23:12696554-12696688
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTCTCACTGTTAATTTGCAGATC
3' ss Score
9.7
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AACCCTGGGTATGCTGGGCGCCAGGAACTACCTGAGAACTTGAAAATTCAGTTCAGAACTGTTGCTATGATGGTTCCTGATAGACAG
Seq A exon
ATCATTATGCGAGTTAAACTTGCAAGCTGTGGTTTTCTTGAAAACGTTATCTTGGCTCAAAAGTTTTATGTACTTTACAAACTCTGTGAAGAGCAACTTACTAAGCAG
Seq C2 exon
GTTCATTATGACTTTGGGTTGAGAAATATTCTATCTGTATTGAGGACACTCGGATCTCAAAAAAGAGCCAGACCAGAAGATAGTGAATTAAGCACGGTCATGAGAGGACTGAGAGATATGAACCTTTCTAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'57-58,'57-57,58-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(12.1=100)
A:
PF127742=AAA_6=FE(15.1=100)
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCTGGGTATGCTGGGC
R:
TTAGAAAGGTTCATATCTCTCAGTCC
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]