RnoEX6062074 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9423142-9424883:+
Coord C1 exon
chr20:9423142-9423228
Coord A exon
chr20:9423456-9423563
Coord C2 exon
chr20:9424749-9424883
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCACTGTACCAACCTGCAGATC
3' ss Score
8.52
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AACCCCGGATACGCTGGGCGCCAGGAACTGCCCGAAAACTTAAAAATCCAGTTTAGAACAGTTGCGATGATGGTTCCTGATAGGCAG
Seq A exon
ATCATCATGCGAGTTAAGCTGGCAAGCTGTGGCTTCCTTGAAAATGTTATCTTGGCGCAAAAGTTTTACGTTCTCTATAAACTCTGCGAAGAGCAGCTCACGAAACAG
Seq C2 exon
GTCCACTATGACTTCGGACTGAGAAATATCCTGTCTGTATTGAGGACCCTTGGATCTCAGAAAAGAGCACGGCCAGAAGACAGTGAGCTAAGCACGGTCATGAGAGGACTACGAGACATGAACCTTTCCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'73-77,'73-75,74-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(12.1=100)
A:
PF127742=AAA_6=FE(15.1=100)
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGCCCGAAAACTTAA
R:
GGAAAGGTTCATGTCTCGTAGTCC
Band lengths:
194-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]