DreEX6039509 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9238263-9241860:+
Coord C1 exon
chr16:9238263-9238450
Coord A exon
chr16:9239378-9239572
Coord C2 exon
chr16:9241726-9241860
Length
195 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTTATACCTACAGAAC
3' ss Score
9.54
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTCTTGCTCAGTCTGGATCCTGGGGTTGTTTTGATGAGTTTAACCGCATTGACTTGCCAGTGCTTTCGGTAGCAGCTCAACAGATCGCTATTGTGCTCACCTGCAAGAAAGAACGTCGGAAGAACTTCATTTTTACTGATGGAGATAATGTAGAGATGAATCCTGAGTTTGGCATCTTCCTCACCATG
Seq A exon
AACCCTGGATATGCAGGCAGACAGGAGCTTCCAGAGAATCTAAAAATCAACTTCCGCTCTGTAGCGATGATGGTTCCTGACAGACAGATCATTATCAGGGTGAAGCTGGCGAGCTGTGGCTTCATTGATAATATCGAGCTGGCCAGAAAATTCTTCACTCTGTACAAACTGTGTGAGGAGCAGCTCTCTAAACAG
Seq C2 exon
GTTCATTATGACTTTGGCCTCCGCAATATTCTTTCTGTCCTGCGCACTCTTGGTGCTGCAAAACGAGCCAATCCTAATGACACAGAGTCCACAATTGTGATGAGAGTTCTGCGAGACATGAACCTGTCTAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.7=100)
A:
PF127742=AAA_6=FE(27.6=100)
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCTGGATCCTGGGGTT
R:
TCGTTTTGCAGCACCAAGAGT
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]