MmuEX6053060 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28256946-28261594:+
Coord C1 exon
chr15:28256946-28257133
Coord A exon
chr15:28257477-28257671
Coord C2 exon
chr15:28261460-28261594
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGGGTTTTGCTTCCATTCAGAAC
3' ss Score
8.49
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GACTGGCACAGTCTGGGTCCTGGGGTTGCTTTGATGAATTCAACCGTATCGATCTACCAGTTCTGTCAGTTGCAGCCCAGCAAATCTCCATTATTCTCACGTGTAAAAAGGAGCATAAAAAATCTTTCATTTTTACTGATGGAGATAATGTGACCATGAACCCAGAATTTGGACTTTTTCTAACCATG
Seq A exon
AACCCTGGCTATGCTGGACGCCAGGAGCTCCCGGAGAACTTGAAGATCAACTTCCGCTCTGTGGCTATGATGGTCCCTGACCGGCAGATTATCATCAGGGTGAAGCTGGCCAGCTGCGGCTTCATTGATAACGTAGTTCTGGCCAGAAAATTTTTCACGCTCTACCAGCTGTGTGAGGAGCAGCTCTCGAAGCAG
Seq C2 exon
GTTCACTATGACTTTGGTCTCCGCAACATTCTGTCAGTTCTGCGCACCCTGGGAGCAGCAAAAAGAGCCAGTCCCACGGATACAGAATCCACCATCGTCATGCGCGTGCTGCGGGACATGAATCTTTCCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.7=100)
A:
PF127742=AAA_6=FE(27.6=100)
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGGGTTGCTTTGATGA
R:
TGGGACTGGCTCTTTTTGCTG
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: