GgaEX6020587 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78549034-78551891:+
Coord C1 exon
chr2:78549034-78549221
Coord A exon
chr2:78551239-78551433
Coord C2 exon
chr2:78551757-78551891
Length
195 bp
Sequences
Splice sites
3' ss Seq
AAACTTGTTATTTTATCCAGAAT
3' ss Score
4.71
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTCTTGCTCAGTCTGGCTCCTGGGGTTGCTTTGATGAATTCAATCGTATTGATTTACCAGTATTATCAGTAGCTGCACAGCAAATTGCAATTGTGTTGACGTGCAAGAAAGAACATAAGAAAAGCTTTGTTTTTACTGATGGAGATAATGTGGAAATGAACCCTGAATTTGGCATCTTTCTTACTATG
Seq A exon
AATCCAGGATATGCTGGACGGCAAGAACTTCCTGAAAACTTGAAGATCAACTTCCGTTCAGTGGCCATGATGGTTCCTGATCGTCAAATTATAATTCGTGTCAAGTTGGCTAGTTGTGGTTTTATTGCTAATGTTGTATTGGCAAGGAAATTCTTTACACTGTACAAGCTCTGCGAAGAACAGCTATCAAAGCAG
Seq C2 exon
GTGCATTATGATTTTGGTTTGCGGAATATATTGTCAGTGCTACGCACATTAGGAGCGGCAAAAAGAGCAAAGCCTACGGATACTGAGTCTACCATAGTTATGCGTGTGCTGAGAGACATGAACCTCTCTAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'42-46,'42-45,43-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.7=100)
A:
PF127742=AAA_6=FE(27.6=100)
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGGGTTGCTTTGATGA
R:
CTTTGCTCTTTTTGCCGCTCC
Band lengths:
244-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]