HsaEX6097379 @ hg19
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13824308-13830322:-
Coord C1 exon
chr5:13830135-13830322
Coord A exon
chr5:13829619-13829813
Coord C2 exon
chr5:13824308-13824442
Length
195 bp
Sequences
Splice sites
3' ss Seq
GGGCTTTATTTTCTGTTTAGAAT
3' ss Score
6.5
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GACTGGCACAGTCTGGATCCTGGGGTTGTTTTGATGAATTTAACCGTATTGATCTACCAGTTCTCTCGGTTGCAGCCCAGCAAATTTCCATTATTCTGACATGTAAAAAGGAGCACAAAAAGTCTTTTATCTTTACTGATGGAGATAATGTGACTATGAACCCTGAATTTGGGCTTTTCTTAACCATG
Seq A exon
AATCCTGGCTATGCCGGACGGCAGGAACTCCCTGAAAACTTGAAGATTAATTTCCGCTCAGTGGCCATGATGGTGCCTGACCGTCAGATTATCATAAGGGTGAAGTTGGCTAGTTGTGGCTTCATTGACAACGTTGTTTTGGCCAGGAAGTTTTTCACGCTCTACAAACTGTGTGAGGAGCAGCTTTCTAAGCAG
Seq C2 exon
GTTCATTATGACTTTGGCCTGCGTAACATTCTGTCAGTTCTTCGGACCTTGGGAGCAGCAAAAAGAGCCAATCCAATGGATACGGAGTCCACGATTGTCATGCGTGTACTACGGGACATGAATCTTTCTAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'38-39,'38-38,39-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.7=100)
A:
PF127742=AAA_6=FE(27.6=100)
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGATCCTGGGGTTGTT
R:
TTTTTGCTGCTCCCAAGGTCC
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)