BtaEX6076033 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59396972-59402915:+
Coord C1 exon
chr20:59396972-59397159
Coord A exon
chr20:59397492-59397686
Coord C2 exon
chr20:59402781-59402915
Length
195 bp
Sequences
Splice sites
3' ss Seq
CGGTTTTATTTTCTGTACAGAAT
3' ss Score
7.42
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GACTGGCACAGTCTGGATCCTGGGGTTGTTTTGATGAATTTAACCGTATCGATCTACCAGTTCTCTCCGTTGCAGCCCAGCAGATTTCCATTATTCTGACATGTAAAAAGGAGCGTAAAAAATCTTTTATTTTTACTGATGGAGATAATGTAACTATGAACCCTGAATTTGGGCTTTTTCTAACCATG
Seq A exon
AATCCTGGCTACGCTGGGCGGCAGGAACTCCCCGAAAACTTGAAGATTAACTTCCGCTCTGTGGCCATGATGGTCCCTGACCGGCAGATTATCATCAGGGTGAAGCTGGCCAGTTGTGGCTTTATTGACAACATTGTTTTGGCCAGGAAGTTTTTTACACTCTACAAGTTGTGTGAGGAGCAACTTTCTAAGCAG
Seq C2 exon
GTCCATTATGACTTTGGTCTGCGTAATATTCTGTCAGTTCTGCGAACCCTGGGAGCAGCCAAGAGAGCCAACCCCACAGATACGGAGTCCACGATCGTCATGCGTGTGCTGCGAGATATGAATCTTTCCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'38-38,'38-37,39-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.7=100)
A:
PF127742=AAA_6=FE(27.6=100)
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCAGTTCTCTCCGTTGCA
R:
TTCATATCTCGCAGCACACGC
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]