MmuEX6076579 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30878072-30879735:+
Coord C1 exon
chr17:30878072-30878158
Coord A exon
chr17:30878253-30878360
Coord C2 exon
chr17:30879601-30879735
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCACTGTGTTAACCTGCAGATC
3' ss Score
10.67
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AACCCTGGATATGCCGGGCGCCAGGAACTGCCAGAAAACTTAAAAATCCAGTTTAGAACAGTTGCAATGATGGTTCCTGATCGGCAG
Seq A exon
ATCATTATGCGAGTTAAGCTTGCTAGCTGTGGCTTTCTTGAAAATGTTATCTTGGCGCAGAAGTTTTATGTTCTCTATAAACTCTGCGAAGAGCAGCTTACTAAACAG
Seq C2 exon
GTCCACTATGACTTTGGACTGAGAAATATCCTGTCTGTGCTGAGGACCCTTGGGTCTCAGAAAAGAGCTCGGCCAGAAGACAGTGAGTTAAGCACGGTCATGAGAGGGCTACGAGACATGAACCTTTCTAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'50-47,'50-46,51-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(12.1=100)
A:
PF127742=AAA_6=FE(15.1=100)
C2:
PF127742=AAA_6=PD(10.3=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGCCAGAAAACTTAAAAA
R:
AGAAAGGTTCATGTCTCGTAGCC
Band lengths:
194-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: