BtaEX6097352 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12683287-12695354:+
Coord C1 exon
chr23:12683287-12683465
Coord A exon
chr23:12689140-12689327
Coord C2 exon
chr23:12695268-12695354
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTAACTGTTTTTCACACCAGGTC
3' ss Score
9
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTGCTACATCACTTTGGCACAGGCTTTGGGAATGAACATGGGAGGGGCTCCAGCAGGACCTGCGGGCACTGGCAAAACCGAAACGACGAAAGACATGGGAAGATGTTTGGGGAAATATGTGGTCGTGTTTAATTGCTCAGATCAAATGGATTTCAGAGGGCTAGGAAGGATTTTTAAAG
Seq A exon
GTCTTGCACAGTCAGGTTCCTGGGGGTGTTTTGATGAGTTTAACAGAATTGAATTGCCTGTGTTATCAGTGGCAGCCCAACAAATTTACATCGTCTTGACAGCAAGAAAAGAGAGAAAAAAACAGTTTATTTTTTCTGATGGTGATTGTGTTGATTTAAATCCAGAATTTGGAATCTTCTTAACAATG
Seq C2 exon
AACCCTGGGTATGCTGGGCGCCAGGAACTACCTGAGAACTTGAAAATTCAGTTCAGAACTGTTGCTATGATGGTTCCTGATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'55-56,'55-55,56-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(25.9=100)
A:
PF127742=AAA_6=FE(26.7=100)
C2:
PF127742=AAA_6=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCACAGGCTTTGGGAAT
R:
TCAGGAACCATCATAGCAACAGT
Band lengths:
247-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]