MmuEX6076581 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30874196-30878158:+
Coord C1 exon
chr17:30874196-30874374
Coord A exon
chr17:30876513-30876700
Coord C2 exon
chr17:30878072-30878158
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTAACTATTTCTCTTGCCAGGTC
3' ss Score
10.09
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATGCTACATCACGCTGGCTCAGGCTCTGGGAATGAACATGGGCGGTGCTCCAGCAGGACCCGCCGGGACGGGTAAAACCGAAACCACAAAAGACATGGGCAGGTGTTTGGGCAAGTATGTGGTTGTGTTCAATTGTTCCGATCAGATGGATTTCCGAGGCCTCGGACGGATTTTCAAAG
Seq A exon
GTCTTGCACAGTCCGGTTCCTGGGGTTGCTTTGATGAGTTTAACAGAATTGAATTGCCCGTTTTATCTGTGGCGGCGCAACAAATTTACATAGTTTTGACAGCGAGGAAAGAGAGGAAAAAACAGTTCATCTTCTCAGATGGCGATTGTGTGGATTTAAATCCAGAATTCGGAATCTTCCTAACCATG
Seq C2 exon
AACCCTGGATATGCCGGGCGCCAGGAACTGCCAGAAAACTTAAAAATCCAGTTTAGAACAGTTGCAATGATGGTTCCTGATCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'48-45,'48-44,49-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(25.9=100)
A:
PF127742=AAA_6=FE(26.7=100)
C2:
PF127742=AAA_6=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGCTCTGGGAATGAAC
R:
CTGCCGATCAGGAACCATCAT
Band lengths:
250-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: