GgaEX6029627 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28801031-28804953:-
Coord C1 exon
chr3:28804775-28804953
Coord A exon
chr3:28803310-28803497
Coord C2 exon
chr3:28801031-28801117
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCCCCCTTTTTTAGGCC
3' ss Score
12.46
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GTGCTATATAACTTTAGCTCAGGCTTTGGGAATGAACATGGGAGGAGCTCCAGCTGGACCAGCTGGAACTGGTAAAACAGAAACAACGAAAGACATGGGAAAGGCTCTGGGAAAATATGTCGTAGTCTTCAACTGTTCTGATCAAATGGATTTCAGAGGTTTGGGTAGGATTTTCAAAG
Seq A exon
GCCTTGCACAGTCTGGATCTTGGGGATGTTTTGATGAATTCAACCGGATTGAGTTGCCTGTCTTGTCAGTAGCAGCACAACAAATTTATATTATCTTAACAGCAAGAAAAGAAAGAAAGAAGCAGTTCATTTTTTCTGATGGAGACTGTGTAGATTTAAATCCAGAGTTTGGAATTTTCCTTACAATG
Seq C2 exon
AATCCTGGATATGCTGGACGCCAAGAGCTACCAGAAAATCTCAAAATTCTGTTTAGAACTGTGTCAATGATGGTTCCAGATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(25.9=100)
A:
PF127742=AAA_6=FE(26.7=100)
C2:
PF127742=AAA_6=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGCTTTGGGAATGAAC
R:
TCTGGAACCATCATTGACACAGT
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]