RnoEX6062075 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9419201-9423228:+
Coord C1 exon
chr20:9419201-9419379
Coord A exon
chr20:9421486-9421673
Coord C2 exon
chr20:9423142-9423228
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTAACTATTTCTCCCGTCAGGCC
3' ss Score
8.17
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATGCTACATCACGCTGGCTCAGGCGCTTGGAATGAACATGGGCGGTGCTCCAGCAGGACCCGCCGGGACGGGTAAAACGGAAACCACAAAAGACATGGGCAGGTGTTTGGGCAAGTATGTGGTTGTGTTCAACTGCTCCGACCAGATGGATTTCCGAGGCCTAGGGAGGATTTTCAAAG
Seq A exon
GCCTTGCCCAGTCCGGTTCCTGGGGTTGCTTTGATGAGTTCAACAGAATTGAATTGCCTGTTTTATCTGTGGCGGCCCAACAAATTTACATAGTTCTGACAGCGAGGAAAGAGAGGAAAAAACAGTTCATCTTCTCAGACGGCGATTGCGTGGACTTAAATCCAGAATTCGGAATCTTCCTAACCATG
Seq C2 exon
AACCCCGGATACGCTGGGCGCCAGGAACTGCCCGAAAACTTAAAAATCCAGTTTAGAACAGTTGCGATGATGGTTCCTGATAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'71-74,'71-73,72-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(25.9=100)
A:
PF127742=AAA_6=FE(26.7=100)
C2:
PF127742=AAA_6=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCGCTTGGAATGAACA
R:
TCAGGAACCATCATCGCAACTG
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]