BtaEX6097365 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12656221-12658430:+
Coord C1 exon
chr23:12656221-12656334
Coord A exon
chr23:12657634-12657696
Coord C2 exon
chr23:12658330-12658430
Length
63 bp
Sequences
Splice sites
3' ss Seq
GATTATATTATTCATTACAGGAA
3' ss Score
7.07
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTCTGTACAAGATGAACTAGTACAAGTGCAGCCAAAGTTTAAAAGTAATCTACTTGAGTCTGTGGAAGTTTTTCGTGAGGATGTGATGAACTTTGCAGAAGCGTACGAGACG
Seq A exon
GAAGGACCCATGGTTCCAAATATACCACCCCAAGAAGCTAGCAACAGGCTACAGATCTTTCAG
Seq C2 exon
GCCAATTTTGATGATCTATGGAGGAAATTCGTTACATATTCATCTGGAGAACAACTTTTTGGGTTGCCTGTGACTGACTATGAGGTTTTACACAAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(1.5=17.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGAAGTTTTTCGTGAGGA
R:
GTCAGTCACAGGCAACCCAAA
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]