HsaEX0020216 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38800098-38805818:+
Coord C1 exon
chr6:38800098-38800211
Coord A exon
chr6:38802355-38802417
Coord C2 exon
chr6:38805718-38805818
Length
63 bp
Sequences
Splice sites
3' ss Seq
GATTATATTCTTCCTTACAGGAA
3' ss Score
10.63
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
GTTTCAGTACAAGAGGACCTAGTTCAAGTGCAGCCAAAGTTTAAAAGCAATCTACTTGAGTCTGTGGAAGTTTTTCGTGAGGACGTGATAAACTTTGCAGAAGCATATGAATTG
Seq A exon
GAAGGACCTATGGTTCCAAATATACCACCCCAAGAAGCTAGCAACAGGCTACAGATATTTCAG
Seq C2 exon
GCCAGTTTCGATGATCTGTGGAGGAAATTTGTTACGTATTCATCTGGTGAACAACTTTTTGGATTGCCTGTGACTGATTATGAGGTTTTACACAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(1.5=17.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTTTTTCGTGAGGACGT
R:
ACCTCATAATCAGTCACAGGCA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)