RnoEX6062082 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9393314-9397173:+
Coord C1 exon
chr20:9393314-9393427
Coord A exon
chr20:9394224-9394286
Coord C2 exon
chr20:9397073-9397173
Length
63 bp
Sequences
Splice sites
3' ss Seq
GATATTATTATTTCTTACAGGAA
3' ss Score
7.93
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTCCGTGCAAGATGAACTTGTGCAAGTGCAACCGAAATTCAAAAGCAGCCTGCTTGAGTCGGTGGATGTCTTCCGGGAGGACGTTATAAACTTCACAGAAGCCTATGAGACG
Seq A exon
GAAGGACCCATGGTACCAAATATTCCACCCCAAGAGGCTAGCAACAGGCTGCAGATATTCCAG
Seq C2 exon
GCCAATTTCGATGATCTATGGAGGAAATTTGTCACATATTCAGCCGGGGAACAACTTTTTGGATTACCCGTGACTGACTATGAGGTCTTACACAAGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'56-60,'56-59,57-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(1.5=17.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGAGTCGGTGGATGTCT
R:
ACCTCATAGTCAGTCACGGGT
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]