GgaEX6029618 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28816729-28819062:-
Coord C1 exon
chr3:28818949-28819062
Coord A exon
chr3:28818345-28818407
Coord C2 exon
chr3:28816729-28816829
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTTTATTGTTTGTTTAAAAGGAA
3' ss Score
6.61
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATCAGTATTCAAGATGAGCTGACTCGAGTTCAGCCCAAATTTAAAAGCAATTTACTGGAATCAGTTGCAATTTTTCGGGAGGATGTGTCAAACTTTGAAACATCATATGAAACG
Seq A exon
GAAGGCCCTATGGTTCCAAATATTCCACCTCAGGAAGCTAGTAATAGGCTACAGATCTTTCAG
Seq C2 exon
GGTAATTTTGATGAGCTTTGGAGAAAGTTTATCACATACTCTTCTGGAGAACAGTTGTTTGGATTGCCTGTCACAGACTATGAAGTTTTGCATAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'11-12,'11-11,12-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(1.5=17.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTGCAATTTTTCGGGAGGA
R:
AGTCTGTGACAGGCAATCCAA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]