MmuEX0015095 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30849218-30852525:+
Coord C1 exon
chr17:30849218-30849331
Coord A exon
chr17:30849979-30850041
Coord C2 exon
chr17:30852425-30852525
Length
63 bp
Sequences
Splice sites
3' ss Seq
AATGGAGATATTTCTTGCAGGAA
3' ss Score
4.63
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTCCGTACAAGGTGAACTTGTGAAAGTGCAGCCCAAATTTAAAAGCAACCTGCTCGAGTCGGTGAAGGTCTTCTGTGAGGACGTTATAAACTTTACAGAAGCCTATGAGACG
Seq A exon
GAAGGACCCATGGTACCAAATATTCCACCCCAAGAGGCTAGCAACAGGCTGCAGATATTCCAG
Seq C2 exon
GCCAATTTCGACGATTTATGGAGGAAATTTGTCACATATTCATCCGGGGAGCAACTTTTTGGATTACCTGTGACTGACTACGAGGTTTTACACAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'35-32,'35-31,36-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(1.5=17.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTCGGTGAAGGTCTTCT
R:
ACCTCGTAGTCAGTCACAGGT
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: