BtaEX6097368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12646926-12650262:+
Coord C1 exon
chr23:12646926-12647052
Coord A exon
chr23:12647837-12648072
Coord C2 exon
chr23:12650158-12650262
Length
236 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTGTCTTCACCAGAGC
3' ss Score
10.6
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GAGTTTTTGGCTAACAATCCCTCTCTGACTGAAATCAGATCTGAAATTCTACACTATGCGACTTTTGAACAGGAAATCGATGAGTTGAAGCCTATTATAGTTGTAGGAGCACTTGAATTGCATACAG
Seq A exon
AGCCAATGAAATTGGCCTTATCAATTGAGGCTAAGGCATGGAAGATGCTACTCTGTCGATATTTGAATGAAGAATACAAAAAGAAGATGTCAGACATGATAGCATTTATCAACGAATACTTGAAAAAGTTATCTAGACCTATCCGTGACTTAGATGATGTCAGATTTGCCATGGAAGCCTTGTCTTGTATCCGTGACAATGAAATTCAAATGGACATGACTTTGGGACCAATTGAA
Seq C2 exon
GAAGCCTATGCTATTTTAAACCGATTTGAAGTTGAAGTCACCAAAGAAGAATCAGAAGCAGTAGACACCTTGCGATATTCTTTCAACAAATTGCAGAGTAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'39-40,'39-39,40-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGCTAACAATCCCTCTCTGAC
R:
CGCTTTACTCTGCAATTTGTTGA
Band lengths:
228-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]